De novo transcriptome assembly of shrimp Palaemon serratus
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چکیده
منابع مشابه
De novo transcriptome assembly of shrimp Palaemon serratus
The shrimp Palaemon serratus is a coastal decapod crustacean with a high commercial value. It is harvested for human consumption. In this study, we used Illumina sequencing technology (HiSeq 2000) to sequence, assemble and annotate the transcriptome of P. serratus. RNA was isolated from muscle of adults individuals and, from a pool of larvae. A total number of 4 cDNA libraries were constructed,...
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Given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. In this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. First, the contiguous sequencesare generated using de Bruijn graph with d...
متن کاملclustering of short read sequences for de novo transcriptome assembly
given the importance of transcriptome analysis in various biological studies and considering thevast amount of whole transcriptome sequencing data, it seems necessary to develop analgorithm to assemble transcriptome data. in this study we propose an algorithm fortranscriptome assembly in the absence of a reference genome. first, the contiguous sequencesare generated using de bruijn graph with d...
متن کاملDe novo transcriptome assembly with ABySS
MOTIVATION Whole transcriptome shotgun sequencing data from non-normalized samples offer unique opportunities to study the metabolic states of organisms. One can deduce gene expression levels using sequence coverage as a surrogate, identify coding changes or discover novel isoforms or transcripts. Especially for discovery of novel events, de novo assembly of transcriptomes is desirable. RESUL...
متن کاملUltrastructure of the microsporidian Inodosporus octospora (Thelohaniidae), a parasite of the shrimp Palaemon serratus (Crustacea, Decapoda).
A parasite of the muscle of the shrimp Palaemon serratus has been examined by light and electron microscopy. Development occurs among myofibrils and induces ultrastructural alterations of the muscle fibers causing white discoloration. This microsporidian is characterized by uninucleate, later diplokaryotic and di-diplokaryotic meronts. The mother cell develops by rosette-like budding into 8 uni...
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ژورنال
عنوان ژورنال: Genomics Data
سال: 2017
ISSN: 2213-5960
DOI: 10.1016/j.gdata.2016.12.009